MR Spectroscopy - Add a Metabolite (Numaris X)

MR Spectroscopy – Add a Metabolite Numaris X – Job Aid MR Spectroscopy – Add a Metabolite – Numaris X If a metabolite is not present in the Siemens Spectro Browser, you can add a new metabolite to the Spectro Browser customer Spectro templates. Once created and saved this customer metabolite template can used to process the MR Spectro data and display the defined metabolite. 1. Open the Patient Browser. 2. Right-click on the Patient Study and select Open With > MR Spectro. MR_Angiography 11/1 8 2015 918 115FU Spain_MAC 7128/2015 1:05:36 PM Gemany MAC ARESOLVE DI View as Bead Only we Germany MAC Batch Open MR Neuro 10 1/1/158 : Flow LV_How Asigni Workflow MR Neurology Cancel Worelow Search Paberg with DICOM OR MR Frontale Switzerland MR_ Neurology Protection state Head Le Stiche Mismatch H Semnem_UAc New Commination MR_Oncology Semnem_MAC Resume Examination Money_Ar Tumor_Prior LIK MAL Onco Trend Avin Metastatic De Germany LA HAADS SEDU SY 3. In the MR Spectro Analysis, choose a SVS or CSI Protocol (e.g., csi_se_135). Left-click Spectro Browser icon. MR Spectro Analysis csi_se_135,11/13/2003 3:22 PM csi_se 135 csi_se 30,11/13/2003 3:32 PM csi se 30 svs_se_30,11/13/2003 3:37 PM svs se 30 sVs_se_30,11/13/2003 3:43 PM Ww SVS_se_30 AB Export Export Selected Selected Compare Selected Browse Unrestricted | Published by Siemens Healthineers AG, 2025 SIEMENS Master Template Effective Date: 3/5/2020 | HOOD05162003074494 Job Aid Effective Date: 25 July 2025 | QR700025950 Healthineers 4. In the Spectro Browser, under Systems select the Field Strength [1.5T or 3T]. a. Select 1H [options include: 1H or 31P], select 1H. b. Left-click Metabolite Templates tab. c. Left-click Create New icon. Spectro Browser ? Show lu Siemens VIn vivo t Customer View Details Phantom Import Export Systems Protocols Metabolite Templates Model Signal Files 1.5 T Metabolite Template 1H L Acetate_qa 31P L Cho_se 120 3.0 T Ly Cho_se_135 Lu Cho_se 270 1H Le Cho_se 30 31P Ly Cho_st_135 Ly Cho_st 20 L Cho_st 270 Ly Ci_se_120 Lu Cr1 lu Cr2 Wy GIn_se 30 Wy Gin_st 20 Ly Glu se 30 L Glu st 20 Ly Glx se 30 L Glx st 20 Create new ... View .. Delete Cancel 5. In the Create New Metabolite Template, complete the fields. a. Under Parameters, enter name of the Metabolite, (e.g., GABA). b. Enter Line shape (Gaussian or Lorentzian), (e.g., Gaussian). c. Uncheck box, Use for match algorithm (unchecked by default). d. Uncheck box, Parameterization with model signal (unchecked by default). e. Choose the Save As icon. Create New Metabolite Template ? > Parameters Metabolite GABA GABA Line shape Gaussian Scale Factor Frequency Use for match algorithm Width Phase Parameterization with model signal Save Save As Cancel Unrestricted | Published by Siemens Healthineers AG, 2025 SIEMENS Master Template Effective Date: 3/5/2020 | HOOD05162003074494 Job Aid Effective Date: 25 July 2025 | QR700025950 Healthineers Page 2 of 9 6. In the Save Metabolite Template As window, under Template Name, enter name (e.g., GABA_135_csi_se). Select the Save button. Save Metabolite Template As ... X Show V Ww Siemens V In vivo ៛ Customer Phantom View Details Systems Protocols Metabolite Templates Model Signal Files 1.5 T Metabolite Template 1H L Acetate_qa 31P Lu Cho_se_120 le Cho_se_135 3.0 T lu Cho_se 270 1H Lu Cho_se_30 31P L Cho st 135 L Cho st 20 L Cho st 270 L Ci se 120 L Cr1 L Cr2 L Gln se 30 L Gln_st 20 Lu Glu_se 30 Lu Glu_st 20 L Glx_se 30 L Glx st 20 Template name GABAL 135_csi_se Save Cancel 7. Re-open the Spectro Browser, left-click on the Metabolite Templates tab. a. Choose the Metabolite created (GABA_135_csi_se). b. Select the View/Edit icon. Spectro Browser ? X Show Vw Siemens In vivo i Customer Phantom View Details Import Export Systems Protocols Metabolite Templates Model Signal Files 1.5 T Metabolite Template 1H L Acetate_qa 31P Le Cho_se 120 I Cho_se_135 3.0 T I Cho_se 270 1H L Cho_se 30 31P Le Cho_st 135 Che ton Ly Cho_st 20 Le Cho_st 270 L Ci_se_120 GABA 135 csi se Wy GIn_se 30 I Gin_st 20 Ly Glu se 30 Le Glu_st 20 L Glx se 30 Create new .. View/Edit Delete Cancel Unrestricted | Published by Siemens Healthineers AG, 2025 Master Template Effective Date: 3/5/2020 | HOOD05162003074494 SIEMENS Job Aid Effective Date: 25 July 2025 | QR700025950 Healthineers Page 3 of 9 8. Check the box, Parameterization with Model Signal. Select Browse. Edit Metabolite Template - GABA_135_csi_se ? X Parameters Metabolite GABA GABA Line shape Gaussian Scale Factor Frequency Use for match algorithm Width Phase Parameterization with model signal Model Signal File EMPTY Browse .. Spectral filter Save Save As. Cancel 9. Under Model Signal File, from the templates select the metabolite, sequence, and TE matching the customer metabolite created (e.g., GABA_qa_se_135). Left-click Select. Select Model Signal File ? X Show lw Siemens In vivo i Customer View Details Phantom Systems Protocols Metabolite Templates Model Signal Files 1.5 T Name System Nucleus Sequence TE [ms] TM [ms] Band w .. Pulse T. 1H L Cr3_qa_st 270 1.5 T 1H st 270 10 1000 0.14 31P Lu Cr3_se_120 1.5 T 1H se 120 1000 0.01 O Lu Cr3_se 135 1.5 T 1H se 135 1000 0.01 3.0 T O Lu Cr3_se 270 1.5 T 1H se 270 1000 0.01 O 1H Lu Cr3_se 30 1.5 T 1H se 30 1000 0.01 O 31P Lu Cr3_st 135 1.5 T 1H st 135 10 1000 0.07 Lu Cr3 st 20 1.5 T 1H st 20 10 1000 0.01 L Cr3_st 270 1.5 T 1H st 270 10 1000 0.14 W Gaba_qa_se_135 1.5 T 1H se 135 1000 0.01 O L Gaba_qa_se 270 1.5 T 1H se 270 1000 0.01 O L Gaba_qa_se_30 1.5 T 1H se 30 O 1000 0.01 L Gaba_qa_st_135 1.5 T 1H st 135 10 1000 0.07 L Gaba_qa_st_20 1.5 T 1H st 20 10 1000 0.01 L Gaba_qa_st_270 1.5 T 1H st 270 10 1000 0.14 L Gaba_se 120 1.5 T 1H se 120 O 1000 0.01 Ly Gaba_se 135 1.5 T 1H se 135 0 1000 0.01 L Gaba se 270 1.5 T 1H se 270 1000 0.01 Select Cancel Unrestricted | Published by Siemens Healthineers AG, 2025 SIEMENS Master Template Effective Date: 3/5/2020 | HOOD05162003074494 Job Aid Effective Date: 25 July 2025 | QR700025950 Healthineers Page 4 of 9 10. In the Edit Metabolite Template window, select Save. Edit Metabolite Template - GABA_135_csi_se ? X Parameters Metabolite GABA GABA Line shape Gaussian Scale Factor Frequency Use for match algorithm Width Phase Parameterization with model signal Model Signal File Siemens11.5 T11H\Gaba_qa_se_135 Browse ... Spectral filter Save Save As .. Cancel 11. In the Spectro Browser window, click the X in the upper right corner to close. Spectro Browser ?| x Show W Siemens ¥ In vivo w Details Mi Customer Phantom Import Export Systems Protocols Metabolite Templates Model Signal Files + 1.5 T Metabolite Template 1H Ly Acetate_qa 31P Ly Cho_se 120 12. In Spectro Analysis, right-click on the CSI_135 protocol, choose Edit Protocol. MR Spectro Analysis Germany_MA *12M/1983, M. Csi se 135,11/13/2003 3:22 PM 11/13/20 csi se 135 Select Protocol. tra_der csi se 30,11/13/2003 csi se 30 Edit Protocol .. ectro1.R svs se 30,11/13/2003 Save Protocol 1 8888 svs se 30 2003 svs se 30,11/13/2003 Save Protocol As ... PM svs se 30 Delete AB Export Export Export Spectro Compare CSI Selected Selected Selected Browser SP H47.6 SL 10 Tra Unrestricted | Published by Siemens Healthineers AG, 2025 SIEMENS Master Template Effective Date: 3/5/2020 | HOOD05162003074494 Job Aid Effective Date: 25 July 2025 | QR700025950 Healthineers Page 5 of 9 13. In the Protocol Editor window select Prior Knowledge tab. Click the + button to add the created metabolite. Protocol Editor - csi_se_135 X Protocol name csi_se_135 Properties Prior Knowledge Post Processing Water + Metabolite Water > NAA Line shape Gaussian Cr1 Use for match algorithm >Cho Tolerance 15 Hz Cr2 Common Parameters Parameterization with model signal > Extra Parameters Model Signal File Siemens\1.5 T\1H\Water_se_135 Browse Spectral filter Note: This metabolite is used for reference processing. OK Cancel 14. From the Metabolite Template, choose the Metabolite name created (e.g., GABA_135_csi_se). Click Select. Select Metabolite Template X Show V Ww Siemens In vivo i Customer View Details Phantom Systems Protocols Metabolite Templates Model Signal Files 1.5 T Metabolite Template 1H L Acetate_qa L Cho_se 120 Ly Cho_se_135 L Cho_se_270 Ly Cho_se 30 Ly Cho_st 135 Ly Cho_st 20 L Cho_st 270 Ly Ci_se 120 Lu Cr1 ¡ GABA 135_csi se Ly Gin_se 30 Wy Gin_st_20 Ly Glu_se 30 Ly Glu_st_20 L Glx se 30 Select Cancel Unrestricted | Published by Siemens Healthineers AG, 2025 SIEMENS Master Template Effective Date: 3/5/2020 | HOOD05162003074494 Job Aid Effective Date: 25 July 2025 | QR700025950 Healthineers Page 6 of 9 15. In the Protocol Editor window, click OK. Protocol Editor - csi_se_135 ? > Protocol name csi_se_135 Properties Prior Knowledge Post Processing + Metabolite Water Water GABA Line shape Gaussian NAA Use for match algorithm > Cr1 Tolerance 15 Hz > Cho > Cr2 Parameterization with model signal Common Parameters Model Signal File Siemens\1.5 TH\Water_se_135 Browse. Extra Parameters Spectral filter Note: This metabolite is used for reference processing. OK Cancel 16. In the MR Spectro Analysis area, scroll down and find the updated protocol created. Click on the New Protocol created to see the updated spectrum. SIEMENS Healthineers O @ MR Spectro . 12/1/1983 M Germany_MAC 2 I(NAA)Il(Cr1 ) 10.62 % MR Spectro Q + Cho)/l(Cr1) .63 11.31 % MR_Spectro MR_Spectro MR Spectro Analysis Radiologie Uni Tuebingen Germany_MAC Ref: Congress Germany_MAC Ref: Congress M2/1/1983, M, 19Y Avanto Avanto syngo MR 2004V 4VB11A M12/1/1983, M. 19Y 11/13/2003 11/13/2003 syngo MR 2004V 4V811A sVs_se_30,11/13/2003 3:37 PM HFS 27 HFS Ww Svs_se_30 t2_tirm_tra_dark-fluid +LFH csi_se_135 0.45 +LPH svs_se_30,11/13/2003 3:43 PM latest latest/csi_ge_135,2/Spectrum Ww SVs_se_30 -> Spectro1 Refimage. -> Spectro1 Spectrum.13 0.35 2.42 csi_se_135,11/13/2003 3:22 PM STUDY 189881250 STUDY 189881250 11/13/2003 11/13/2003 0.30 csi_se_135.11/13/2003 3:22 PM 3:00:54 PM 3:22 37 PM 0.25 i csi se 135 2* E. Export Export Export Spectro Compare CS Selected Selected Selected Browser SP H47.6 GABA SL 10 Tra Viewing MPR THICK TR 9000 SP H37.1 TE 109 Foy 310 230 TR 1500 TE 135 N& 1 Tra-Con(-6) N& 4 3.0 2.5 V POS AB LA PH HE1-4 VOX AP LR FH TA 07:12 'Dir2d1_21/150 SIZE 10 10 10 HE1-4__4 csi_sc/90 t Integral SIZE 10 10 10 Voxel 137 40xBl-1 3 MR_ Spectro Radiologie Uni Tuebingen MR_Spectro Radiologie Uni Tuchingen Ref.: Congress Germany_MAC Ref: Congress MR_Spectro KNAA) Rodbioge Chi Tuebingen $12/1/1983, M, 19Y Syngo IHR 2004/ 49B112 "12/1/1983, M, 19Y Avanto Gennony_MAC Ref: Congress syngo MR 2004V 4VB11A ^12/1/1983, M. 19Y Avanto 11/13/2003 11/13/2003 HFS syngo MR 2004Y 4VB11A Findings Navigator [2_tse_cor_3m_448_pot +LPH 12_1se_sog_rst_448 +LFH 11/13/2003 HFS Tetest latest t2_firm-tra_dark-fluid +LPH Name Value Source -> Spectrot Refimiage 2 .. > Spectro1.Refhage 3 STUDY 100001250 STUDY 100091250 -> Spectro1 Metabolite mage.1 11/13/2003 11M 3/2003 STUD Y 109201 250 3:06:47 PM 3.09:36 Ft 11/13/2008 Series 4 Series 5 3.00 51 PM1 A R 3.22 Tools SPC 3.3 5cm SPC 3.3 CSI 5cm CS 2.27 CSI SP A13.0 SPL12 SP H47 6 SL 10 F SL 10 A SL 10 Synch Lock Hide Hide Lines Reset Tra Navigati. Graphics Timepoi ... Tra MRI 4 IM& 1 Tra MRI 2 IMA 1 MPR THICK TR 4000 SP A22.5 MPR THICK MR 5 MA1 MPR THICK SP L6.2 TR 9000 SP H37.1 FOY 310*230 TE 104 FoY 230'342 TR 4210 FOY 220*327 TE 109 Cor>Tra(6) TE 102 N& 3 NA 1 NA2 Sag Inde HE1-4 VOX AP LR FH HE1-4 OK AP LR FF HEI-4 VOX AP LR FH "tr2d1_21/150 ZE 10 10 10 'tse2d1_13/150 SIZE 10 10 10 voxel 137 jpixel 1 37 Voxel 1 37 Unrestricted | Published by Siemens Healthineers AG, 2025 SIEMENS Master Template Effective Date: 3/5/2020 | HOOD05162003074494 Job Aid Effective Date: 25 July 2025 | QR700025950 Healthineers Page 7 of 9 17. Select the new user created metabolite (e.g., csi_se_135), in the MR Spectro Analysis window. Right-click Save Protocol As. MR Spectro + MR MR Spectro Analysis Ge svs_se_30,11/13/2003 3:37 PM svs se 30 12 svs_se 30,11/13/2003 3:43 PM late svs se 30 csi se 135,11/13/2003 3:22 PM ST csi se 135 1 CSI_se_135, 11/13/2003 3:22 PM ¡ csi_se 135 2* Select Protocol ... Edit Protocol ... HO Export Selected Export Selected Export selected Selected Save Protocol Save Protocol As ... Viewing Delete 18. In the Save Protocol As window, enter the Protocol name (e.g., GABA_135_csi_se). Select Save. The new customer metabolite template will be saved. Save Protocol As ... ? X Show V W Siemens M In vivo View Details f Customer Phantom Systems Protocols Metabolite Templates Model Signal Files › 1.5 T 1H Protocol System Nucleus Sequence Purpose TE [ms] Lu qa_csi_se 135 1.5 T 1H csi se Phantom 60-200 Lu qa_csi_se 270 1.5 T 1H csi se Phantom 200-1000 I qa_csi se 30 1.5 1 1H csi se Phantom 10-60 Lu qa_csi_st_135 1.5 T 1H csi_st Phantom 60-200 I qa_csi_st 20 1.5 T 1H csi st Phantom 10-60 I qa_csi_st 270 1H csi_st Phantom 200-1000 Lu qa_fid 1.5 T 1H fid Phantom 0-5 Lu qa_svs_se 135 1.5 T 1H 1H svs se Phantom 60-200 lu qa_svs_se 270 1.5 T svs se Phantom 200-1000 I qa_svs_se 30 1.5 T 1H svs se Phantom 20-60 I qa_svs_st 135 1.5 T 1H svs st Phantom 60-200 I qa_svs_st 20 1.5 T 1H svs st Phantom 10-60 Lu qa_svs_st 270 1.5 T 1H 1H svs st Phantom 200-1000 L QC 1.5 T TH csi se QC 0-500 L SVS se 135 1.5 T svs se In vivo 120-150 Protocol name GABA_135_csi_se Save Cancel Unrestricted | Published by Siemens Healthineers AG, 2025 SIEMENS Master Template Effective Date: 3/5/2020 | HOOD05162003074494 Job Aid Effective Date: 25 July 2025 | QR700025950 Healthineers Page 8 of 9 Please note that the learning material is for training purposes only! For the proper use of the software or hardware, please always use the Operator Manual or Instructions for Use (hereinafter collec- tively “Operator Manual”) issued by Siemens Healthineers. This material is to be used as training material only and shall by no means substitute the Operator Manual. Any material used in this training will not be updated on a regular basis and does not neces- sarily reflect the latest version of the software and hardware available at the time of the training. The Operator's Manual shall be used as your main reference, in particular for relevant safety information like warnings and cautions. Note: Some functions shown in this material are optional and might not be part of your system. Certain products, product related claims or functionalities (hereinafter collectively “Functionality”) may not (yet) be commercially available in your country. 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